Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
sync_0128 | sync_0306 | CotB mutant. | Repeats containing protein. | 0.750 |
sync_0128 | sync_1040 | CotB mutant. | Conserved hypothetical protein. | 0.725 |
sync_0128 | sync_1043 | CotB mutant. | Hypothetical protein; Identified by Glimmer2; putative. | 0.696 |
sync_0128 | sync_1332 | CotB mutant. | Conserved hypothetical protein. | 0.748 |
sync_0128 | sync_1433 | CotB mutant. | Possible endolysin. | 0.500 |
sync_0128 | sync_1916 | CotB mutant. | Hypothetical conserved protein; Identified by match to protein family HMM PF07681. | 0.721 |
sync_0128 | sync_1926 | CotB mutant. | Conserved hypothetical protein. | 0.675 |
sync_0128 | sync_2059 | CotB mutant. | Hypothetical protein; Identified by Glimmer2; putative; Belongs to the OprB family. | 0.645 |
sync_0128 | sync_2139 | CotB mutant. | Conserved hypothetical protein. | 0.765 |
sync_0128 | sync_2918 | CotB mutant. | Lipoprotein, putative; Identified by match to protein family HMM TIGR03042. | 0.765 |
sync_0306 | sync_0128 | Repeats containing protein. | CotB mutant. | 0.750 |
sync_0306 | sync_1040 | Repeats containing protein. | Conserved hypothetical protein. | 0.726 |
sync_0306 | sync_1043 | Repeats containing protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.766 |
sync_0306 | sync_1332 | Repeats containing protein. | Conserved hypothetical protein. | 0.773 |
sync_0306 | sync_1433 | Repeats containing protein. | Possible endolysin. | 0.753 |
sync_0306 | sync_1916 | Repeats containing protein. | Hypothetical conserved protein; Identified by match to protein family HMM PF07681. | 0.738 |
sync_0306 | sync_2059 | Repeats containing protein. | Hypothetical protein; Identified by Glimmer2; putative; Belongs to the OprB family. | 0.768 |
sync_0306 | sync_2139 | Repeats containing protein. | Conserved hypothetical protein. | 0.774 |
sync_0306 | sync_2918 | Repeats containing protein. | Lipoprotein, putative; Identified by match to protein family HMM TIGR03042. | 0.760 |
sync_1040 | sync_0128 | Conserved hypothetical protein. | CotB mutant. | 0.725 |
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