STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1041Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321. (623 aa)    
Predicted Functional Partners:
sync_2717
Possible general (type II) secretion pathway protein D precursor; Identified by match to protein family HMM PF00263; match to protein family HMM PF07660; Belongs to the bacterial secretin family.
  
  
 0.769
sync_1043
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.747
sync_2579
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
   
 0.742
sync_2581
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
   
 0.740
sync_1500
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
   
 0.732
sync_1501
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
   
 0.732
sync_0678
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
   
 0.729
sync_0306
Repeats containing protein.
  
   
 0.718
sync_0101
Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.716
sync_0315
Uncharacterized conserved membrane protein.
  
     0.711
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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