STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1044Putative cell envelope-related function transcriptional attenuator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. (302 aa)    
Predicted Functional Partners:
sync_1042
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
sync_1043
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
sync_1406
Conserved hypothetical protein.
 
     0.722
sync_1715
Phosphatase, HAD superfamily, subfamily IIIA; Identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668.
  
     0.595
rffM
Glycosyl transferase WecB/TagA/CpsF family protein; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
 
   
 0.593
sync_0386
Conserved hypothetical protein.
 
     0.584
napA
Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00582; match to protein family HMM PF00999.
       0.580
sync_0245
Uncharacterized conserved membrane-associated protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.563
sync_0301
Glycosyl transferase, group 4 family protein; Identified by match to protein family HMM PF00953.
 
  
 0.517
sync_1046
ABC transporter, multidrug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
    0.517
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.