Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
napATransporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00582; match to protein family HMM PF00999. (696 aa)    
Predicted Functional Partners:
sync_1046
ABC transporter, multidrug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
   
 
 0.683
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
  
 0.652
sync_1043
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.622
sync_2911
Chloride transporter, chloride channel (ClC) family protein; Identified by match to protein family HMM PF00654.
  
 
 0.596
sync_1044
Putative cell envelope-related function transcriptional attenuator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.
     
 0.580
sync_1042
Hypothetical protein; Identified by Glimmer2; putative.
       0.568
sync_2463
Lipoprotein, putative.
  
   
 0.551
sync_0573
Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
     
 0.531
sync_2162
Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.
   
 
 0.526
sync_0392
Proline-rich region.
  
    0.521
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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