recD protein (Synechococcus sp. CC9311) - STRING interaction network

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Score

recD

Exodeoxyribonuclease V, alpha subunit. (559 aa)

Predicted Functional Partners:

recC

0.984

recB

0.981

sync_1052

0.775

sync_1056

0.773

recQ

0.657

deaD

0.557

sync_1057

0.546

pcrA

0.543

sync_1050

0.523

topA

0.503

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
deaD	recB	sync_1051	sync_1054	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	0.561
deaD	recC	sync_1051	sync_1055	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	0.557
deaD	recD	sync_1051	sync_1053	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Exodeoxyribonuclease V, alpha subunit.	0.557
deaD	recQ	sync_1051	sync_0564	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.935
deaD	sync_1050	sync_1051	sync_1050	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Hypothetical protein.	0.773
deaD	sync_1052	sync_1051	sync_1052	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050.	0.533
deaD	sync_1056	sync_1051	sync_1056	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.	0.544
pcrA	recD	sync_0227	sync_1053	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	Exodeoxyribonuclease V, alpha subunit.	0.543
pcrA	recQ	sync_0227	sync_0564	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.895
pcrA	topA	sync_0227	sync_2114	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.835
recB	deaD	sync_1054	sync_1051	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.561
recB	recC	sync_1054	sync_1055	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	0.991
recB	recD	sync_1054	sync_1053	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Exodeoxyribonuclease V, alpha subunit.	0.981
recB	sync_1050	sync_1054	sync_1050	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Hypothetical protein.	0.523
recB	sync_1052	sync_1054	sync_1052	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050.	0.774
recB	sync_1056	sync_1054	sync_1056	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.	0.774
recB	sync_1057	sync_1054	sync_1057	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Conserved hypothetical protein.	0.546
recC	deaD	sync_1055	sync_1051	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.557
recC	recB	sync_1055	sync_1054	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	0.991
recC	recD	sync_1055	sync_1053	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	Exodeoxyribonuclease V, alpha subunit.	0.984