recD protein (Synechococcus sp. CC9311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

recD

Exodeoxyribonuclease V, alpha subunit. (559 aa)

Predicted Functional Partners:

recB

0.977

recC

0.974

sync_1052

0.773

sync_1056

0.773

recQ

0.600

pcrA

0.572

polA

0.551

sync_1174

0.547

sync_1057

0.546

deaD

0.540

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
deaD	recB	sync_1051	sync_1054	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	0.606
deaD	recC	sync_1051	sync_1055	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	0.605
deaD	recD	sync_1051	sync_1053	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Exodeoxyribonuclease V, alpha subunit.	0.540
deaD	recQ	sync_1051	sync_0564	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.933
deaD	sync_1052	sync_1051	sync_1052	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Mannose-6-phosphate isomerase; Identified by match to protein family HMM PF01050.	0.535
deaD	sync_1056	sync_1051	sync_1056	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.	0.536
pcrA	polA	sync_0227	sync_0928	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.838
pcrA	recD	sync_0227	sync_1053	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	Exodeoxyribonuclease V, alpha subunit.	0.572
pcrA	recQ	sync_0227	sync_0564	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.883
pcrA	sync_1174	sync_0227	sync_1174	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	RecF/RecN/SMC N terminal domain protein.	0.615
polA	pcrA	sync_0928	sync_0227	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	0.838
polA	recB	sync_0928	sync_1054	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	0.703
polA	recC	sync_0928	sync_1055	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	0.653
polA	recD	sync_0928	sync_1053	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Exodeoxyribonuclease V, alpha subunit.	0.551
polA	recQ	sync_0928	sync_0564	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.966
polA	sync_1174	sync_0928	sync_1174	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	RecF/RecN/SMC N terminal domain protein.	0.916
recB	deaD	sync_1054	sync_1051	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Superfamily II DNA/RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.606
recB	polA	sync_1054	sync_0928	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.703
recB	recC	sync_1054	sync_1055	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Possible exodeoxyribonuclease V gamma chain; Identified by match to protein family HMM PF04257.	0.994
recB	recD	sync_1054	sync_1053	Exodeoxyribonuclease V, beta subunit; Identified by match to protein family HMM PF00580.	Exodeoxyribonuclease V, alpha subunit.	0.977