Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1087Conserved hypothetical protein. (248 aa)    
Predicted Functional Partners:
sync_1378
N-acetylmuramoyl-L-alanine amidase (family 2); Identified by match to protein family HMM PF01510.
  
     0.575
sync_1719
Uncharacterized conserved protein with a signal peptide.
  
     0.545
sync_1296
Conserved hypothetical protein; Identified by similarity to GB:BAC09630.1.
  
     0.542
sync_2615
Conserved hypothetical.
  
     0.538
sync_1265
Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.
  
     0.504
sync_2460
Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.
  
     0.495
sync_1698
Conserved hypothetical protein.
 
     0.488
sync_1225
Conserved hypothetical protein.
  
     0.485
sync_2267
Conserved hypothetical protein.
  
     0.483
sync_2099
Uncharacterized protein.
  
     0.478
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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