Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1092FAD-dependent monooxygenase; Identified by match to protein family HMM PF01494. (421 aa)    
Predicted Functional Partners:
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
 
 
 0.789
sync_1091
Hypothetical protein; Identified by Glimmer2; putative.
       0.686
sync_1090
Hypothetical protein; Identified by Glimmer2; putative.
       0.549
sync_1608
FAD-dependent monooxygenase, putative; Identified by match to protein family HMM PF01494.
  
     0.545
sync_0855
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.533
sync_2424
Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
  
 
 0.472
sync_2232
Conserved hypothetical protein; Identified by similarity to GB:CAE07060.1.
 
 0.419
sync_0154
Membrane protein, putative.
 
 
 0.413
sync_0811
Possible AraC-type regulatory protein, putative; Identified by match to protein family HMM PF00165.
  
     0.407
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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