Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1102Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF07681. (180 aa)    
Predicted Functional Partners:
sync_1754
Putative membrane protein; Identified by similarity to GB:CAE20407.1.
  
     0.714
sync_0388
Uncharacterized ycii family conserved protein; Identified by match to protein family HMM PF03795.
  
     0.660
sync_0876
Putative membrane protein.
  
  
 0.660
sync_1540
Bacterial regulatory proteins, Crp family protein.
  
   0.654
sync_0287
Uncharacterized protein.
  
     0.611
sodX
Nickel-type superoxide dismutase maturation protease; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02754.
  
     0.609
sync_1825
Uncharacterized protein.
  
     0.578
sync_0891
Putative membrane protein; Identified by match to protein family HMM PF00892.
  
 
   0.569
sync_2544
Putative membrane protein; Identified by similarity to GB:CAE20354.1.
  
     0.530
sync_0297
Conserved hypothetical protein.
  
     0.519
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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