STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gidGid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (459 aa)    
Predicted Functional Partners:
sync_1139
Putative cation efflux transporter (CDF family); Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
       0.773
crtH
Carotenoid isomerase; Identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730.
       0.690
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.685
psbY
Photosystem II protein Y-related protein; Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II. Belongs to the PsbY family.
       0.634
fbp
Transferase hexapaptide repeat protein.
       0.599
sync_1143
Conserved hypothetical protein; Identified by similarity to GB:CAE07418.1.
       0.535
sync_1141
Hypothetical protein; Identified by Glimmer2; putative.
       0.520
sync_1142
Conserved hypothetical protein.
       0.520
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
  
 0.421
sync_2450
Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily.
   
    0.400
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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