sync_1142 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_1142

Conserved hypothetical protein. (93 aa)

Predicted Functional Partners:

sync_1143

0.817

sync_1141

0.773

psbX

0.767

cpcE

0.761

sync_2918

0.748

sync_1803

0.744

sync_2916

0.740

cpeC

0.739

sync_0118

0.736

sync_0128

0.734

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cpcE	cpeC	sync_0486	sync_0513	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	0.802
cpcE	psbX	sync_0486	sync_2461	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	0.613
cpcE	sync_0118	sync_0486	sync_0118	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Conserved hypothetical protein.	0.710
cpcE	sync_0128	sync_0486	sync_0128	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	CotB mutant.	0.759
cpcE	sync_1142	sync_0486	sync_1142	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Conserved hypothetical protein.	0.761
cpcE	sync_1803	sync_0486	sync_1803	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Carotenoid binding protein; Identified by match to protein family HMM PF02136; Belongs to the orange carotenoid-binding protein family.	0.720
cpcE	sync_2916	sync_0486	sync_2916	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Identified by match to protein family HMM PF04932.	0.596
cpcE	sync_2918	sync_0486	sync_2918	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.	0.750
cpeC	cpcE	sync_0513	sync_0486	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	0.802
cpeC	psbX	sync_0513	sync_2461	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	0.520
cpeC	sync_0128	sync_0513	sync_0128	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	CotB mutant.	0.695
cpeC	sync_1142	sync_0513	sync_1142	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Conserved hypothetical protein.	0.739
cpeC	sync_1803	sync_0513	sync_1803	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Carotenoid binding protein; Identified by match to protein family HMM PF02136; Belongs to the orange carotenoid-binding protein family.	0.589
cpeC	sync_2918	sync_0513	sync_2918	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.	0.596
psbX	cpcE	sync_2461	sync_0486	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.	0.613
psbX	cpeC	sync_2461	sync_0513	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	Phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; match to protein family HMM PF01383; Belongs to the phycobilisome linker protein family.	0.520
psbX	sync_0118	sync_2461	sync_0118	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	Conserved hypothetical protein.	0.726
psbX	sync_1142	sync_2461	sync_1142	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	Conserved hypothetical protein.	0.767
psbX	sync_1803	sync_2461	sync_1803	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	Carotenoid binding protein; Identified by match to protein family HMM PF02136; Belongs to the orange carotenoid-binding protein family.	0.546
psbX	sync_2916	sync_2461	sync_2916	Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.	Identified by match to protein family HMM PF04932.	0.496