sync_1147 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1147

Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily. (107 aa)

Predicted Functional Partners:

sync_1148

0.992

sync_2569

0.713

sync_0156

0.702

thrS

0.693

sync_0385

0.622

sync_1149

0.612

gloB

0.608

gshB

0.580

plsC

0.554

ubiA

0.538

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gloB	sync_0156	sync_1941	sync_0156	Metallo-beta-lactamase superfamily hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.876
gloB	sync_1147	sync_1941	sync_1147	Metallo-beta-lactamase superfamily hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	0.608
gshB	sync_0156	sync_2657	sync_0156	Glutathione synthase; Identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.487
gshB	sync_1147	sync_2657	sync_1147	Glutathione synthase; Identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	0.580
plsC	sync_0156	sync_1150	sync_0156	Phospholipid and glycerol acyltransferase; Identified by match to protein family HMM PF01553.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.793
plsC	sync_1147	sync_1150	sync_1147	Phospholipid and glycerol acyltransferase; Identified by match to protein family HMM PF01553.	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	0.554
plsC	sync_1148	sync_1150	sync_1148	Phospholipid and glycerol acyltransferase; Identified by match to protein family HMM PF01553.	Identified by match to protein family HMM PF01722; Belongs to the BolA/IbaG family.	0.647
plsC	sync_1149	sync_1150	sync_1149	Phospholipid and glycerol acyltransferase; Identified by match to protein family HMM PF01553.	Uncharacterized membrane protein.	0.715
sync_0156	gloB	sync_0156	sync_1941	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Metallo-beta-lactamase superfamily hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	0.876
sync_0156	gshB	sync_0156	sync_2657	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Glutathione synthase; Identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.	0.487
sync_0156	plsC	sync_0156	sync_1150	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Phospholipid and glycerol acyltransferase; Identified by match to protein family HMM PF01553.	0.793
sync_0156	sync_1147	sync_0156	sync_1147	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	0.702
sync_0156	thrS	sync_0156	sync_1866	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).	0.795
sync_0156	ubiA	sync_0156	sync_2142	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family.	0.688
sync_0385	sync_1147	sync_0385	sync_1147	Uncharacterized HesB family conserved protein.	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	0.622
sync_1147	gloB	sync_1147	sync_1941	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	Metallo-beta-lactamase superfamily hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	0.608
sync_1147	gshB	sync_1147	sync_2657	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	Glutathione synthase; Identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.	0.580
sync_1147	plsC	sync_1147	sync_1150	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	Phospholipid and glycerol acyltransferase; Identified by match to protein family HMM PF01553.	0.554
sync_1147	sync_0156	sync_1147	sync_0156	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.702
sync_1147	sync_0385	sync_1147	sync_0385	Glutaredoxin homolog; Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.	Uncharacterized HesB family conserved protein.	0.622