sync_1175 protein (Synechococcus sp. CC9311)

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Score

sync_1175

DNA repair exonuclease; Identified by match to protein family HMM PF00149. (394 aa)

Predicted Functional Partners:

sync_1174

0.997

polA

0.955

recQ

0.710

recA

0.682

sync_0446

0.597

pcrA

0.583

sync_1176

0.576

holB

0.540

psbO

0.533

sync_1177

0.531

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
holB	polA	sync_2592	sync_0928	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.935
holB	recA	sync_2592	sync_0443	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.593
holB	recQ	sync_2592	sync_0564	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.671
holB	sync_0446	sync_2592	sync_0446	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	0.666
holB	sync_1174	sync_2592	sync_1174	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	RecF/RecN/SMC N terminal domain protein.	0.433
holB	sync_1175	sync_2592	sync_1175	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	DNA repair exonuclease; Identified by match to protein family HMM PF00149.	0.540
pcrA	polA	sync_0227	sync_0928	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.838
pcrA	recA	sync_0227	sync_0443	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.897
pcrA	recQ	sync_0227	sync_0564	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.883
pcrA	sync_0446	sync_0227	sync_0446	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	0.641
pcrA	sync_1174	sync_0227	sync_1174	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	RecF/RecN/SMC N terminal domain protein.	0.615
pcrA	sync_1175	sync_0227	sync_1175	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	DNA repair exonuclease; Identified by match to protein family HMM PF00149.	0.583
polA	holB	sync_0928	sync_2592	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	0.935
polA	pcrA	sync_0928	sync_0227	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073.	0.838
polA	recA	sync_0928	sync_0443	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.979
polA	recQ	sync_0928	sync_0564	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.	0.966
polA	sync_0446	sync_0928	sync_0446	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	0.942
polA	sync_1174	sync_0928	sync_1174	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	RecF/RecN/SMC N terminal domain protein.	0.916
polA	sync_1175	sync_0928	sync_1175	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	DNA repair exonuclease; Identified by match to protein family HMM PF00149.	0.955
psbO	sync_1175	sync_0353	sync_1175	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	DNA repair exonuclease; Identified by match to protein family HMM PF00149.	0.533