STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1176Conserved hypothetical protein; Identified by match to protein family HMM PF01636. (431 aa)    
Predicted Functional Partners:
sync_1177
Conserved hypothetical protein.
 
     0.932
sync_1178
Possible Transglycosylase SLT domain; Identified by match to protein family HMM PF01464.
       0.648
sync_1925
Conserved hypothetical protein.
  
     0.605
sync_1830
Predicted enzyme of the cupin superfamily protein; Identified by match to protein family HMM PF05899.
  
     0.579
sync_1175
DNA repair exonuclease; Identified by match to protein family HMM PF00149.
     
 0.576
sync_1174
RecF/RecN/SMC N terminal domain protein.
       0.572
sync_0573
Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
   
  
 0.568
sync_1926
Conserved hypothetical protein.
  
     0.550
sync_1793
Conserved hypothetical protein.
  
     0.542
sync_1179
Conserved hypothetical protein; Identified by similarity to GB:CAE21049.1.
       0.494
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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