STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1178Possible Transglycosylase SLT domain; Identified by match to protein family HMM PF01464. (330 aa)    
Predicted Functional Partners:
sync_1177
Conserved hypothetical protein.
       0.701
sync_1176
Conserved hypothetical protein; Identified by match to protein family HMM PF01636.
       0.648
sync_0912
Helicase C-terminal domain; Identified by match to protein family HMM PF00271.
  
     0.608
sync_1179
Conserved hypothetical protein; Identified by similarity to GB:CAE21049.1.
       0.581
sync_2059
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the OprB family.
  
     0.548
thiol
O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM TIGR01326.
       0.525
sync_0306
Repeats containing protein.
  
     0.524
sync_1040
Conserved hypothetical protein.
  
     0.515
sync_1175
DNA repair exonuclease; Identified by match to protein family HMM PF00149.
   
   0.510
sync_1174
RecF/RecN/SMC N terminal domain protein.
       0.487
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.