sync_1214 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_1214

ABC transporter RzcB, putative. (569 aa)

Predicted Functional Partners:

sync_1215

0.984

sync_1216

0.962

sync_1217

0.868

hlyD

0.802

sync_0709

0.755

sync_1129

0.746

sync_1260

0.728

sync_1213

0.502

sync_1218

0.472

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hlyD	sync_0709	sync_2862	sync_0709	Possible transporter component; Identified by match to protein family HMM PF00529.	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	0.645
hlyD	sync_1129	sync_2862	sync_1129	Possible transporter component; Identified by match to protein family HMM PF00529.	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	0.619
hlyD	sync_1214	sync_2862	sync_1214	Possible transporter component; Identified by match to protein family HMM PF00529.	ABC transporter RzcB, putative.	0.802
hlyD	sync_1215	sync_2862	sync_1215	Possible transporter component; Identified by match to protein family HMM PF00529.	ABC transporter, ATP-binding protein domain protein; Identified by match to protein family HMM PF00005.	0.643
hlyD	sync_1217	sync_2862	sync_1217	Possible transporter component; Identified by match to protein family HMM PF00529.	Structural toxin protein RtxA; Identified by match to protein family HMM PF00353.	0.639
hlyD	sync_1260	sync_2862	sync_1260	Possible transporter component; Identified by match to protein family HMM PF00529.	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	0.626
sync_0709	hlyD	sync_0709	sync_2862	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	Possible transporter component; Identified by match to protein family HMM PF00529.	0.645
sync_0709	sync_1214	sync_0709	sync_1214	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	ABC transporter RzcB, putative.	0.755
sync_0709	sync_1215	sync_0709	sync_1215	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	ABC transporter, ATP-binding protein domain protein; Identified by match to protein family HMM PF00005.	0.569
sync_0709	sync_1216	sync_0709	sync_1216	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	Identified by match to protein family HMM PF00529.	0.755
sync_0709	sync_1217	sync_0709	sync_1217	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	Structural toxin protein RtxA; Identified by match to protein family HMM PF00353.	0.774
sync_1129	hlyD	sync_1129	sync_2862	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	Possible transporter component; Identified by match to protein family HMM PF00529.	0.619
sync_1129	sync_1214	sync_1129	sync_1214	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	ABC transporter RzcB, putative.	0.746
sync_1129	sync_1215	sync_1129	sync_1215	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	ABC transporter, ATP-binding protein domain protein; Identified by match to protein family HMM PF00005.	0.551
sync_1129	sync_1216	sync_1129	sync_1216	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	Identified by match to protein family HMM PF00529.	0.752
sync_1213	sync_1214	sync_1213	sync_1214	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter RzcB, putative.	0.502
sync_1213	sync_1215	sync_1213	sync_1215	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein domain protein; Identified by match to protein family HMM PF00005.	0.502
sync_1213	sync_1216	sync_1213	sync_1216	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00529.	0.502
sync_1214	hlyD	sync_1214	sync_2862	ABC transporter RzcB, putative.	Possible transporter component; Identified by match to protein family HMM PF00529.	0.802
sync_1214	sync_0709	sync_1214	sync_0709	ABC transporter RzcB, putative.	Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.	0.755