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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1215ABC transporter, ATP-binding protein domain protein; Identified by match to protein family HMM PF00005. (719 aa)    
Predicted Functional Partners:
sync_1216
Identified by match to protein family HMM PF00529.
 
 0.956
sync_1214
ABC transporter RzcB, putative.
    
0.852
sync_1217
Structural toxin protein RtxA; Identified by match to protein family HMM PF00353.
 
  
 0.752
sync_1208
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
  
0.663
hlyD
Possible transporter component; Identified by match to protein family HMM PF00529.
 
 
 0.657
sync_1939
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
  
0.616
sync_1046
ABC transporter, multidrug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
  
0.606
sync_1638
Heavy metal ABC transporter (HMT) family, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
  
0.605
sync_0709
Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.
 
  
 0.544
sync_1129
Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.
 
  
 0.526
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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