sync_1232 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1232

Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (255 aa)

Predicted Functional Partners:

envZ

0.996

sync_0573

0.890

sync_0706

0.794

sync_1133

0.789

sync_0263

0.784

sync_0668

0.779

sync_0675

0.771

sync_0807

0.749

sasA

0.740

sync_0286

0.734

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
envZ	sasA	sync_1233	sync_1006	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	0.486
envZ	sync_0573	sync_1233	sync_0573	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.998
envZ	sync_0807	sync_1233	sync_0807	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Possible two-component response regulator; May be pseudogene; identified by match to protein family HMM PF00486.	0.739
envZ	sync_1133	sync_1233	sync_1133	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Histidine protein kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.658
envZ	sync_1232	sync_1233	sync_1232	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.996
sasA	envZ	sync_1006	sync_1233	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.486
sasA	sync_0573	sync_1006	sync_0573	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.563
sasA	sync_0668	sync_1006	sync_0668	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	Two component sensor histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.768
sasA	sync_0807	sync_1006	sync_0807	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	Possible two-component response regulator; May be pseudogene; identified by match to protein family HMM PF00486.	0.561
sasA	sync_1232	sync_1006	sync_1232	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.740
sync_0263	sync_0573	sync_0263	sync_0573	Two component sensor histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.563
sync_0263	sync_0807	sync_0263	sync_0807	Two component sensor histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Possible two-component response regulator; May be pseudogene; identified by match to protein family HMM PF00486.	0.739
sync_0263	sync_1232	sync_0263	sync_1232	Two component sensor histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.784
sync_0286	sync_0573	sync_0286	sync_0573	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.563
sync_0286	sync_0668	sync_0286	sync_0668	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Two component sensor histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.694
sync_0286	sync_0807	sync_0286	sync_0807	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Possible two-component response regulator; May be pseudogene; identified by match to protein family HMM PF00486.	0.697
sync_0286	sync_1133	sync_0286	sync_1133	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Histidine protein kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.749
sync_0286	sync_1232	sync_0286	sync_1232	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.734
sync_0573	envZ	sync_0573	sync_1233	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.998
sync_0573	sasA	sync_0573	sync_1006	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Adaptive-response sensory histidine kinase SasA; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.	0.563