STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1249Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family. (243 aa)    
Predicted Functional Partners:
cpcF
Phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit; Identified by match to protein family HMM PF03130.
  
  
  0.976
cpcE
Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit; Identified by match to protein family HMM PF03130.
  
  
  0.976
cpcA
Phycocyanin, alpha subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338.
  
  
  0.976
cpcB
Phycocyanin, beta subunit; Identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339.
  
  
  0.976
sync_0516
Possible phycobilisome linker polypeptide; Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.
  
  
 
0.928
cpcG1
Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.
  
  
 
0.915
sync_0515
Possible phycobilisome rod-core linker polypeptide (L-RC 28.5); Identified by match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.
  
  
 
0.908
apcD
Allophycocyanin alpha, B subunit; Identified by similarity to SP:P80556; match to protein family HMM PF00502.
  
     0.774
apcE
Anchor polypeptide LCM; Identified by match to protein family HMM PF00427; match to protein family HMM PF00502; Belongs to the phycobilisome linker protein family.
  
     0.774
apcA
Allophycocyanin, alpha subunit; Identified by match to protein family HMM PF00502.
  
     0.774
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.