sync_1266 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1266

Hypothetical protein; Identified by Glimmer2; putative. (62 aa)

Predicted Functional Partners:

sync_1267

0.773

sync_1268

0.773

prfC

0.773

sync_1270

0.590

sync_1265

0.560

sync_1271

0.453

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
prfC	sync_1265	sync_1269	sync_1265	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	0.573
prfC	sync_1266	sync_1269	sync_1266	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
prfC	sync_1267	sync_1269	sync_1267	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
prfC	sync_1268	sync_1269	sync_1268	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	SAM-dependent methyltransferase.	0.794
prfC	sync_1270	sync_1269	sync_1270	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	Conserved hypothetical protein.	0.591
prfC	sync_1271	sync_1269	sync_1271	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.522
sync_1265	prfC	sync_1265	sync_1269	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	0.573
sync_1265	sync_1266	sync_1265	sync_1266	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	Hypothetical protein; Identified by Glimmer2; putative.	0.560
sync_1265	sync_1267	sync_1265	sync_1267	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	Hypothetical protein; Identified by Glimmer2; putative.	0.560
sync_1265	sync_1268	sync_1265	sync_1268	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	SAM-dependent methyltransferase.	0.582
sync_1265	sync_1270	sync_1265	sync_1270	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	Conserved hypothetical protein.	0.438
sync_1265	sync_1271	sync_1265	sync_1271	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.446
sync_1266	prfC	sync_1266	sync_1269	Hypothetical protein; Identified by Glimmer2; putative.	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	0.773
sync_1266	sync_1265	sync_1266	sync_1265	Hypothetical protein; Identified by Glimmer2; putative.	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	0.560
sync_1266	sync_1267	sync_1266	sync_1267	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
sync_1266	sync_1268	sync_1266	sync_1268	Hypothetical protein; Identified by Glimmer2; putative.	SAM-dependent methyltransferase.	0.773
sync_1266	sync_1270	sync_1266	sync_1270	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.590
sync_1266	sync_1271	sync_1266	sync_1271	Hypothetical protein; Identified by Glimmer2; putative.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.453
sync_1267	prfC	sync_1267	sync_1269	Hypothetical protein; Identified by Glimmer2; putative.	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	0.773
sync_1267	sync_1265	sync_1267	sync_1265	Hypothetical protein; Identified by Glimmer2; putative.	Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.	0.560