STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1287Conserved hypothetical protein. (161 aa)    
Predicted Functional Partners:
sync_1288
Possible ABC transporter, ATP binding component; Identified by match to protein family HMM PF00005.
  
 
 0.985
sync_1289
Putative membrane protein, YjgP/YjgQ family protein; Identified by match to protein family HMM PF03739.
  
 
 0.985
sync_2192
Metallo-beta-lactamase superfamily hydrolase.
  
   
 0.784
typA
GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.
       0.776
sync_1286
Conserved hypothetical protein; Identified by match to protein family HMM PF03745.
       0.776
sync_0291
Conserved hypothetical protein.
  
     0.774
sync_1143
Conserved hypothetical protein; Identified by similarity to GB:CAE07418.1.
  
     0.772
sync_1957
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.772
sync_0392
Proline-rich region.
  
    0.770
sync_0563
Uncharacterized protein.
  
     0.770
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.