STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiXDecarboxylase, polyprenyl P-hydroxybenzoate/phenylacrylic acid family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (206 aa)    
Predicted Functional Partners:
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; Belongs to the UbiD family.
 
 
 0.993
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of plastoquinone-9 (PQ-9) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 4-hydroxy-3-solanesylbenzoate. Belongs to the UbiA prenyltransferase family.
 
  
 0.934
sync_0251
NUDIX hydrolase; Identified by match to protein family HMM PF00293.
   
 
  0.900
sync_1307
Conserved hypothetical protein.
       0.812
zam
Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family.
       0.794
sync_1306
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
sync_1305
Uncharacterized protein.
       0.599
sync_1311
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF01169.
       0.571
sync_1312
Fe-S cluster protein; Identified by match to protein family HMM PF03692.
       0.516
sync_1310
Conserved hypothetical protein; Identified by similarity to GB:CAE20939.1; match to protein family HMM PF01169.
       0.514
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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