Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rph | sync_0250 | sync_0317 | sync_0250 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | NUDIX hydrolase. | 0.616 |
| rph | sync_0251 | sync_0317 | sync_0251 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | NUDIX hydrolase; Identified by match to protein family HMM PF00293. | 0.616 |
| rph | sync_0471 | sync_0317 | sync_0471 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Identified by match to protein family HMM PF01612. | 0.982 |
| rph | sync_1336 | sync_0317 | sync_1336 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Identified by match to protein family HMM PF00773. | 0.899 |
| rph | zam | sync_0317 | sync_1309 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family. | 0.899 |
| sync_0250 | rph | sync_0250 | sync_0317 | NUDIX hydrolase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.616 |
| sync_0250 | sync_0251 | sync_0250 | sync_0251 | NUDIX hydrolase. | NUDIX hydrolase; Identified by match to protein family HMM PF00293. | 0.773 |
| sync_0250 | sync_1336 | sync_0250 | sync_1336 | NUDIX hydrolase. | Identified by match to protein family HMM PF00773. | 0.595 |
| sync_0250 | zam | sync_0250 | sync_1309 | NUDIX hydrolase. | Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family. | 0.595 |
| sync_0251 | rph | sync_0251 | sync_0317 | NUDIX hydrolase; Identified by match to protein family HMM PF00293. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.616 |
| sync_0251 | sync_0250 | sync_0251 | sync_0250 | NUDIX hydrolase; Identified by match to protein family HMM PF00293. | NUDIX hydrolase. | 0.773 |
| sync_0251 | sync_1336 | sync_0251 | sync_1336 | NUDIX hydrolase; Identified by match to protein family HMM PF00293. | Identified by match to protein family HMM PF00773. | 0.595 |
| sync_0251 | zam | sync_0251 | sync_1309 | NUDIX hydrolase; Identified by match to protein family HMM PF00293. | Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family. | 0.595 |
| sync_0471 | rph | sync_0471 | sync_0317 | Identified by match to protein family HMM PF01612. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.982 |
| sync_0471 | sync_1336 | sync_0471 | sync_1336 | Identified by match to protein family HMM PF01612. | Identified by match to protein family HMM PF00773. | 0.770 |
| sync_0471 | zam | sync_0471 | sync_1309 | Identified by match to protein family HMM PF01612. | Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family. | 0.770 |
| sync_1305 | sync_1306 | sync_1305 | sync_1306 | Uncharacterized protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.516 |
| sync_1305 | sync_1307 | sync_1305 | sync_1307 | Uncharacterized protein. | Conserved hypothetical protein. | 0.579 |
| sync_1305 | ubiX | sync_1305 | sync_1308 | Uncharacterized protein. | Decarboxylase, polyprenyl P-hydroxybenzoate/phenylacrylic acid family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. | 0.598 |
| sync_1305 | zam | sync_1305 | sync_1309 | Uncharacterized protein. | Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family. | 0.592 |
page 1 of 3