STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1310Conserved hypothetical protein; Identified by similarity to GB:CAE20939.1; match to protein family HMM PF01169. (101 aa)    
Predicted Functional Partners:
sync_1311
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF01169.
 
    
0.835
sync_1312
Fe-S cluster protein; Identified by match to protein family HMM PF03692.
  
    0.801
ycf12
Protein of unknown function (DUF888) family protein; A core subunit of photosystem II (PSII); Belongs to the Ycf12 family.
       0.558
zam
Acetazolamide conferring resistance protein Zam; Identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; Belongs to the RNR ribonuclease family.
       0.534
sync_1307
Conserved hypothetical protein.
       0.522
ubiX
Decarboxylase, polyprenyl P-hydroxybenzoate/phenylacrylic acid family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.507
sync_1306
Hypothetical protein; Identified by Glimmer2; putative.
       0.485
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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