sync_1314 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1314

Possible chloride channel; Identified by match to protein family HMM PF00654. (462 aa)

Predicted Functional Partners:

recJ

0.819

sync_1316

0.574

sync_1317

0.557

sync_1318

0.557

sync_2867

0.485

sync_1482

0.419

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
recJ	sync_1314	sync_1315	sync_1314	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	Possible chloride channel; Identified by match to protein family HMM PF00654.	0.819
recJ	sync_1316	sync_1315	sync_1316	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	0.576
recJ	sync_1317	sync_1315	sync_1317	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	Uncharacterized secreted or membrane protein.	0.557
recJ	sync_1318	sync_1315	sync_1318	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	Phosphoribulokinase/uridine kinase family enzyme.	0.557
sync_1314	recJ	sync_1314	sync_1315	Possible chloride channel; Identified by match to protein family HMM PF00654.	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	0.819
sync_1314	sync_1316	sync_1314	sync_1316	Possible chloride channel; Identified by match to protein family HMM PF00654.	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	0.574
sync_1314	sync_1317	sync_1314	sync_1317	Possible chloride channel; Identified by match to protein family HMM PF00654.	Uncharacterized secreted or membrane protein.	0.557
sync_1314	sync_1318	sync_1314	sync_1318	Possible chloride channel; Identified by match to protein family HMM PF00654.	Phosphoribulokinase/uridine kinase family enzyme.	0.557
sync_1314	sync_1482	sync_1314	sync_1482	Possible chloride channel; Identified by match to protein family HMM PF00654.	Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.	0.419
sync_1314	sync_2867	sync_1314	sync_2867	Possible chloride channel; Identified by match to protein family HMM PF00654.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.485
sync_1316	recJ	sync_1316	sync_1315	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	0.576
sync_1316	sync_1314	sync_1316	sync_1314	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	Possible chloride channel; Identified by match to protein family HMM PF00654.	0.574
sync_1316	sync_1317	sync_1316	sync_1317	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	Uncharacterized secreted or membrane protein.	0.773
sync_1316	sync_1318	sync_1316	sync_1318	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	Phosphoribulokinase/uridine kinase family enzyme.	0.790
sync_1317	recJ	sync_1317	sync_1315	Uncharacterized secreted or membrane protein.	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	0.557
sync_1317	sync_1314	sync_1317	sync_1314	Uncharacterized secreted or membrane protein.	Possible chloride channel; Identified by match to protein family HMM PF00654.	0.557
sync_1317	sync_1316	sync_1317	sync_1316	Uncharacterized secreted or membrane protein.	Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.	0.773
sync_1317	sync_1318	sync_1317	sync_1318	Uncharacterized secreted or membrane protein.	Phosphoribulokinase/uridine kinase family enzyme.	0.773
sync_1318	recJ	sync_1318	sync_1315	Phosphoribulokinase/uridine kinase family enzyme.	single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.	0.557
sync_1318	sync_1314	sync_1318	sync_1314	Phosphoribulokinase/uridine kinase family enzyme.	Possible chloride channel; Identified by match to protein family HMM PF00654.	0.557