Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cbbL | cbbS | sync_1967 | sync_1966 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | 0.999 |
| cbbL | sync_1316 | sync_1967 | sync_1316 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.579 |
| cbbL | sync_1318 | sync_1967 | sync_1318 | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoribulokinase/uridine kinase family enzyme. | 0.900 |
| cbbS | cbbL | sync_1966 | sync_1967 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.999 |
| cbbS | sync_1316 | sync_1966 | sync_1316 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.596 |
| cbbS | sync_1318 | sync_1966 | sync_1318 | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | Phosphoribulokinase/uridine kinase family enzyme. | 0.900 |
| recJ | sync_1314 | sync_1315 | sync_1314 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Possible chloride channel; Identified by match to protein family HMM PF00654. | 0.819 |
| recJ | sync_1316 | sync_1315 | sync_1316 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.576 |
| recJ | sync_1317 | sync_1315 | sync_1317 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Uncharacterized secreted or membrane protein. | 0.557 |
| recJ | sync_1318 | sync_1315 | sync_1318 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Phosphoribulokinase/uridine kinase family enzyme. | 0.557 |
| sync_1314 | recJ | sync_1314 | sync_1315 | Possible chloride channel; Identified by match to protein family HMM PF00654. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | 0.819 |
| sync_1314 | sync_1316 | sync_1314 | sync_1316 | Possible chloride channel; Identified by match to protein family HMM PF00654. | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.574 |
| sync_1314 | sync_1317 | sync_1314 | sync_1317 | Possible chloride channel; Identified by match to protein family HMM PF00654. | Uncharacterized secreted or membrane protein. | 0.557 |
| sync_1314 | sync_1318 | sync_1314 | sync_1318 | Possible chloride channel; Identified by match to protein family HMM PF00654. | Phosphoribulokinase/uridine kinase family enzyme. | 0.557 |
| sync_1316 | cbbL | sync_1316 | sync_1967 | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.579 |
| sync_1316 | cbbS | sync_1316 | sync_1966 | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101. | 0.596 |
| sync_1316 | recJ | sync_1316 | sync_1315 | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | 0.576 |
| sync_1316 | sync_1314 | sync_1316 | sync_1314 | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Possible chloride channel; Identified by match to protein family HMM PF00654. | 0.574 |
| sync_1316 | sync_1317 | sync_1316 | sync_1317 | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Uncharacterized secreted or membrane protein. | 0.773 |
| sync_1316 | sync_1318 | sync_1316 | sync_1318 | Predicted phosphatase/phosphohexomutase of HAD family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Phosphoribulokinase/uridine kinase family enzyme. | 0.790 |
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