Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1325Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. (333 aa)    
Predicted Functional Partners:
sync_1562
Identified by match to protein family HMM PF00498; match to protein family HMM PF00905; match to protein family HMM PF00912.
 
   
 0.629
mrcB
Membrane carboxypeptidase (penicillin-binding protein); Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
  
   
 0.626
sync_1326
Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
  
    0.525
sync_1327
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Identified by match to protein family HMM PF02283.
       0.516
pcxA
CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family.
       0.516
sync_1329
Conserved hypothetical protein.
       0.516
sync_1330
Conserved hypothetical protein; Identified by similarity to GB:CAE20921.1.
       0.459
sync_2014
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
  
  
 0.404
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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