Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| pcxA | sync_1325 | sync_1328 | sync_1325 | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.516 |
| pcxA | sync_1326 | sync_1328 | sync_1326 | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.778 |
| pcxA | sync_1327 | sync_1328 | sync_1327 | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Identified by match to protein family HMM PF02283. | 0.787 |
| pcxA | sync_1329 | sync_1328 | sync_1329 | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | Conserved hypothetical protein. | 0.948 |
| pcxA | sync_1330 | sync_1328 | sync_1330 | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | Conserved hypothetical protein; Identified by similarity to GB:CAE20921.1. | 0.779 |
| pcxA | sync_1331 | sync_1328 | sync_1331 | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1. | 0.651 |
| rlmH | sync_1326 | sync_1600 | sync_1326 | Uncharacterized conserved protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.471 |
| sync_1325 | pcxA | sync_1325 | sync_1328 | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | 0.516 |
| sync_1325 | sync_1326 | sync_1325 | sync_1326 | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.525 |
| sync_1325 | sync_1327 | sync_1325 | sync_1327 | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Identified by match to protein family HMM PF02283. | 0.516 |
| sync_1325 | sync_1329 | sync_1325 | sync_1329 | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Conserved hypothetical protein. | 0.516 |
| sync_1325 | sync_1330 | sync_1325 | sync_1330 | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Conserved hypothetical protein; Identified by similarity to GB:CAE20921.1. | 0.459 |
| sync_1326 | pcxA | sync_1326 | sync_1328 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | CemA family protein; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the Cema family. | 0.778 |
| sync_1326 | rlmH | sync_1326 | sync_1600 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Uncharacterized conserved protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.471 |
| sync_1326 | sync_1325 | sync_1326 | sync_1325 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.525 |
| sync_1326 | sync_1327 | sync_1326 | sync_1327 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; Identified by match to protein family HMM PF02283. | 0.800 |
| sync_1326 | sync_1329 | sync_1326 | sync_1329 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Conserved hypothetical protein. | 0.783 |
| sync_1326 | sync_1330 | sync_1326 | sync_1330 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Conserved hypothetical protein; Identified by similarity to GB:CAE20921.1. | 0.678 |
| sync_1326 | sync_1331 | sync_1326 | sync_1331 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1. | 0.526 |
| sync_1326 | tig | sync_1326 | sync_0066 | Predicted rRNA methylase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.460 |
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