Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sync_1356Hypothetical protein. (195 aa)    
Predicted Functional Partners:
sync_1357
PHP domain protein; Identified by match to protein family HMM PF02811.
       0.760
kaiA
Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]
  
     0.758
sync_2918
Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.
  
     0.753
sync_1019
Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.
  
     0.739
sync_1358
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF03653.
       0.739
sync_1343
Conserved hypothetical protein; Identified by similarity to GB:CAE20910.1.
  
     0.729
sync_2723
Conserved hypothetical protein.
  
     0.727
sync_2471
Conserved hypothetical protein.
  
     0.715
sync_0331
Conserved hypothetical protein.
  
     0.709
cpcG1
Phycobilisome rod-core linker polypeptide cpcG1; Identified by similarity to SP:P29986; match to protein family HMM PF00427; Belongs to the phycobilisome linker protein family.
  
     0.707
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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