sync_1359 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_1359

Identified by match to protein family HMM PF04244. (468 aa)

Predicted Functional Partners:

uvrC

0.827

sync_1360

0.773

sync_2007

0.764

sync_1892

0.741

sync_0257

0.739

sync_1357

0.704

sync_1358

0.665

sync_1356

0.623

phrB

0.599

coaD

0.559

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
coaD	sync_1356	sync_1362	sync_1356	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	Hypothetical protein.	0.459
coaD	sync_1357	sync_1362	sync_1357	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	PHP domain protein; Identified by match to protein family HMM PF02811.	0.503
coaD	sync_1358	sync_1362	sync_1358	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF03653.	0.634
coaD	sync_1359	sync_1362	sync_1359	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	Identified by match to protein family HMM PF04244.	0.559
coaD	sync_1360	sync_1362	sync_1360	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	Hypothetical protein.	0.559
coaD	uvrC	sync_1362	sync_1361	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.635
phrB	sync_1359	sync_0252	sync_1359	Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.	Identified by match to protein family HMM PF04244.	0.599
phrB	uvrC	sync_0252	sync_1361	Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.	Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.479
sync_0257	sync_1359	sync_0257	sync_1359	Blue light photoreceptor cryptochrome.	Identified by match to protein family HMM PF04244.	0.739
sync_0257	sync_2007	sync_0257	sync_2007	Blue light photoreceptor cryptochrome.	Identified by match to protein family HMM PF00875; match to protein family HMM PF03441.	0.766
sync_1356	coaD	sync_1356	sync_1362	Hypothetical protein.	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	0.459
sync_1356	sync_1357	sync_1356	sync_1357	Hypothetical protein.	PHP domain protein; Identified by match to protein family HMM PF02811.	0.760
sync_1356	sync_1358	sync_1356	sync_1358	Hypothetical protein.	Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF03653.	0.739
sync_1356	sync_1359	sync_1356	sync_1359	Hypothetical protein.	Identified by match to protein family HMM PF04244.	0.623
sync_1356	sync_1360	sync_1356	sync_1360	Hypothetical protein.	Hypothetical protein.	0.623
sync_1356	uvrC	sync_1356	sync_1361	Hypothetical protein.	Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.623
sync_1357	coaD	sync_1357	sync_1362	PHP domain protein; Identified by match to protein family HMM PF02811.	Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.	0.503
sync_1357	sync_1356	sync_1357	sync_1356	PHP domain protein; Identified by match to protein family HMM PF02811.	Hypothetical protein.	0.760
sync_1357	sync_1358	sync_1357	sync_1358	PHP domain protein; Identified by match to protein family HMM PF02811.	Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF03653.	0.844
sync_1357	sync_1359	sync_1357	sync_1359	PHP domain protein; Identified by match to protein family HMM PF02811.	Identified by match to protein family HMM PF04244.	0.704