STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1366Conserved hypothetical protein. (233 aa)    
Predicted Functional Partners:
sync_1994
Identified by match to protein family HMM PF06485.
  
     0.762
sync_2096
Conserved hypothetical protein.
  
     0.761
psaL
Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.
  
     0.757
sync_0535
Possible ferredoxin (2Fe-2S); Identified by match to protein family HMM PF00111.
  
     0.753
thf1
Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.
  
     0.752
sync_1271
Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.
  
     0.748
sync_0057
Putative photosystem I assembly related protein Ycf37; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.745
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
     0.743
sync_1039
PsbP; Identified by match to protein family HMM PF01789.
  
     0.738
sync_1555
Conserved hypothetical protein; Identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082.
  
     0.730
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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