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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1378N-acetylmuramoyl-L-alanine amidase (family 2); Identified by match to protein family HMM PF01510. (306 aa)    
Predicted Functional Partners:
sync_1379
PDZ domain; Identified by match to protein family HMM PF00595.
       0.784
sync_1380
Conserved hypothetical protein; Identified by similarity to GB:BAC92231.1.
       0.773
sync_2267
Conserved hypothetical protein.
  
     0.757
sync_2099
Uncharacterized protein.
  
     0.752
xisC
Identified by match to protein family HMM PF00589.
  
     0.746
sync_0963
Conserved hypothetical protein.
 
   
 0.745
sync_1197
Conserved hypothetical protein; Identified by similarity to GB:CAE21077.1.
  
     0.741
sync_1343
Conserved hypothetical protein; Identified by similarity to GB:CAE20910.1.
  
     0.739
sync_1265
Ribonucleotide reductase (Class II); Identified by match to protein family HMM TIGR02505.
  
     0.737
sync_1225
Conserved hypothetical protein.
  
     0.728
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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