STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1400Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergens family protein; Identified by match to protein family HMM PF00578; match to protein family HMM TIGR01409. (183 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.736
htpG
Chaperone protein HtpG; Identified by similarity to SP:Q9S3Q2; match to protein family HMM PF00183; match to protein family HMM PF02518.
       0.591
ggpS
Glucosylglycerol-phosphate synthase; Identified by match to protein family HMM PF00982; match to protein family HMM TIGR02398.
     
 0.578
sync_1402
ABC transporter for sugars, solute-binding protein; Identified by match to protein family HMM PF01547.
       0.574
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
       0.574
sync_1404
ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528.
       0.574
sync_1405
ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
    0.574
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.487
sync_1597
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.480
sync_2779
Flavoprotein; Identified by match to protein family HMM PF00753; match to protein family HMM PF01613.
     
 0.453
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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