STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ggpSGlucosylglycerol-phosphate synthase; Identified by match to protein family HMM PF00982; match to protein family HMM TIGR02398. (494 aa)    
Predicted Functional Partners:
sync_1402
ABC transporter for sugars, solute-binding protein; Identified by match to protein family HMM PF01547.
 
   
 0.801
sync_1405
ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
     
 0.792
sync_1404
ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528.
     
 0.783
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
     
 0.778
sync_0567
Trehalose synthase; Identified by match to protein family HMM PF00128.
 
  
 0.647
glgC
Glucose-1-phosphate adenylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
     
 0.639
stpA
Glucosylglycerol 3-phosphatase; Identified by match to protein family HMM TIGR02399.
     
 0.591
sync_1400
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergens family protein; Identified by match to protein family HMM PF00578; match to protein family HMM TIGR01409.
     
 0.577
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.494
sync_2936
Sucrose phosphate synthase; Identified by match to protein family HMM PF00534; match to protein family HMM TIGR02471; match to protein family HMM TIGR02472.
     
 0.451
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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