STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1406Conserved hypothetical protein. (359 aa)    
Predicted Functional Partners:
rffM
Glycosyl transferase WecB/TagA/CpsF family protein; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
   
 0.881
sync_1044
Putative cell envelope-related function transcriptional attenuator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.
 
     0.722
sync_1542
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.668
sync_0315
Uncharacterized conserved membrane protein.
  
     0.666
sync_0678
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.665
sync_1347
SpoIID/LytB domain protein; Identified by match to protein family HMM TIGR02669.
  
     0.664
sync_1013
Possible LytR-membrane bound transcriptional regulator; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.
 
     0.658
sync_1500
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.656
sync_1501
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.656
sync_2579
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
  
     0.643
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.