STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1407Conserved hypothetical protein; Identified by similarity to GB:CAE20864.1. (100 aa)    
Predicted Functional Partners:
sync_1408
Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1.
 
     0.955
psaK-2
Photosystem I reaction center subunit psaK (Photosystem I subunit X); Identified by match to protein family HMM PF01241; match to protein family HMM TIGR03049.
       0.774
sync_2348
3Fe-4S ferredoxin.
  
     0.773
sync_1581
Identified by match to protein family HMM PF05419.
  
     0.772
sync_1201
Conserved hypothetical protein; Identified by match to protein family HMM PF06799.
  
     0.768
sync_2568
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
     0.762
sync_2460
Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.
  
     0.751
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
     0.748
sync_2028
Conserved hypothetical protein; Identified by similarity to GB:CAE08294.1.
  
     0.745
sync_2096
Conserved hypothetical protein.
  
     0.737
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.