macB protein (Synechococcus sp. CC9311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

macB

Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (409 aa)

Predicted Functional Partners:

sync_2112

0.992

sync_1659

0.976

sync_1186

0.886

sync_0929

0.877

sync_1405

0.774

pyk

0.767

sync_1657

0.654

ftsH-3

0.646

sync_1414

0.614

sync_2503

0.524

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ftsH-3	macB	sync_1417	sync_1416	Metalloprotease, ATP-dependent, FtsH family protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.646
ftsH-3	pyk	sync_1417	sync_1415	Metalloprotease, ATP-dependent, FtsH family protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.	0.630
ftsH-3	sync_1414	sync_1417	sync_1414	Metalloprotease, ATP-dependent, FtsH family protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	Predicted MazG family pyrophosphatase; Identified by match to protein family HMM PF03819.	0.440
macB	ftsH-3	sync_1416	sync_1417	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Metalloprotease, ATP-dependent, FtsH family protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.646
macB	pyk	sync_1416	sync_1415	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.	0.767
macB	sync_0929	sync_1416	sync_0929	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Possible membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.877
macB	sync_1186	sync_1416	sync_1186	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.886
macB	sync_1405	sync_1416	sync_1405	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.774
macB	sync_1414	sync_1416	sync_1414	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Predicted MazG family pyrophosphatase; Identified by match to protein family HMM PF03819.	0.614
macB	sync_1657	sync_1416	sync_1657	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Possible ABC transporter component.	0.654
macB	sync_1659	sync_1416	sync_1659	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.	0.976
macB	sync_2112	sync_1416	sync_2112	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.992
macB	sync_2503	sync_1416	sync_2503	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.524
pyk	ftsH-3	sync_1415	sync_1417	Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.	Metalloprotease, ATP-dependent, FtsH family protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.	0.630
pyk	macB	sync_1415	sync_1416	Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.767
pyk	sync_1414	sync_1415	sync_1414	Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.	Predicted MazG family pyrophosphatase; Identified by match to protein family HMM PF03819.	0.671
sync_0929	macB	sync_0929	sync_1416	Possible membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.877
sync_0929	sync_1657	sync_0929	sync_1657	Possible membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Possible ABC transporter component.	0.507
sync_0929	sync_1659	sync_0929	sync_1659	Possible membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.	0.407
sync_0929	sync_2112	sync_0929	sync_2112	Possible membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.785