thf1 protein (Synechococcus sp. CC9311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

thf1

Uncharacterized protein; May be involved in photosynthetic membrane biogenesis. (252 aa)

Predicted Functional Partners:

psbO

0.787

sync_2925

0.777

sync_2150

0.771

sync_1271

0.763

sync_1039

0.762

sync_2096

0.759

sync_2391

0.757

sync_0241

0.754

sync_1366

0.752

ndhN

0.751

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ndhN	sync_0241	sync_0438	sync_0241	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Rubredoxin; Identified by match to protein family HMM PF00301.	0.482
ndhN	sync_1039	sync_0438	sync_1039	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	PsbP; Identified by match to protein family HMM PF01789.	0.574
ndhN	sync_1271	sync_0438	sync_1271	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.774
ndhN	sync_1366	sync_0438	sync_1366	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Conserved hypothetical protein.	0.613
ndhN	sync_2096	sync_0438	sync_2096	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Conserved hypothetical protein.	0.644
ndhN	sync_2150	sync_0438	sync_2150	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Conserved hypothetical protein.	0.691
ndhN	sync_2925	sync_0438	sync_2925	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Uncharacterized membrane protein.	0.674
ndhN	thf1	sync_0438	sync_1419	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.	0.751
psbO	sync_0241	sync_0353	sync_0241	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Rubredoxin; Identified by match to protein family HMM PF00301.	0.732
psbO	sync_1039	sync_0353	sync_1039	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	PsbP; Identified by match to protein family HMM PF01789.	0.983
psbO	sync_1366	sync_0353	sync_1366	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Conserved hypothetical protein.	0.689
psbO	sync_2096	sync_0353	sync_2096	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Conserved hypothetical protein.	0.770
psbO	sync_2150	sync_0353	sync_2150	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Conserved hypothetical protein.	0.749
psbO	sync_2391	sync_0353	sync_2391	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Putative membrane protein.	0.644
psbO	sync_2925	sync_0353	sync_2925	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Uncharacterized membrane protein.	0.768
psbO	thf1	sync_0353	sync_1419	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.	0.787
sync_0241	ndhN	sync_0241	sync_0438	Rubredoxin; Identified by match to protein family HMM PF00301.	Uncharacterized protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.482
sync_0241	psbO	sync_0241	sync_0353	Rubredoxin; Identified by match to protein family HMM PF00301.	Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.	0.732
sync_0241	sync_1039	sync_0241	sync_1039	Rubredoxin; Identified by match to protein family HMM PF00301.	PsbP; Identified by match to protein family HMM PF01789.	0.742
sync_0241	sync_1271	sync_0241	sync_1271	Rubredoxin; Identified by match to protein family HMM PF00301.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.632