STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thf1Uncharacterized protein; May be involved in photosynthetic membrane biogenesis. (252 aa)    
Predicted Functional Partners:
psbB
Photosystem II P680 chlorophyll A apoprotein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
  
 
   0.903
sync_2925
Uncharacterized membrane protein.
  
    0.780
sync_2150
Conserved hypothetical protein.
  
     0.771
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
  
 0.766
sync_1271
Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.
  
     0.763
sync_0241
Rubredoxin; Identified by match to protein family HMM PF00301.
  
    0.761
sync_1039
PsbP; Identified by match to protein family HMM PF01789.
  
   
 0.760
sync_2096
Conserved hypothetical protein.
  
     0.759
sync_2391
Putative membrane protein.
  
     0.757
sync_1366
Conserved hypothetical protein.
  
     0.752
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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