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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpS-2ATP-dependent Clp protease adaptor protein ClpS; Identified by match to protein family HMM PF02617; Belongs to the ClpS family. (98 aa)    
Predicted Functional Partners:
sync_1424
Transporter, major facilitator family protein; Identified by match to protein family HMM PF03209; match to protein family HMM PF07690.
 
     0.802
sync_1957
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.725
dps
Dps protein; Identified by match to protein family HMM PF00210; Belongs to the Dps family.
   
 
 0.721
sync_1027
Putative Clp protease, ATP-binding subunit ClpC; Identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.
  
 
 0.719
sync_1334
Mo-dependent nitrogenase C-terminus family protein; Identified by match to protein family HMM PF06967.
  
     0.713
sync_1639
Conserved hypothetical protein; Identified by similarity to GB:CAE20668.1.
  
     0.703
sync_1780
AbrB family transciptional regulator.
  
     0.686
clpB
ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
 
 0.682
sync_0950
Conserved hypothetical protein.
  
     0.679
sync_2730
ATPases with chaperone activity, ATP-binding subunit; Identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; Belongs to the ClpA/ClpB family.
  
 
 0.678
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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