STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1429Lactose transport system permease protein; Identified by match to protein family HMM PF00528. (299 aa)    
Predicted Functional Partners:
sync_0977
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.993
sync_0114
Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.
 
 0.978
sync_2395
Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.973
sync_1404
ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528.
 
 0.969
sync_1405
ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.966
sync_1402
ABC transporter for sugars, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 0.846
purK
Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
  
  
 0.686
sync_2811
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.656
sync_2817
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.656
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.572
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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