Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_1437Predicted exonuclease involved in mRNA processing. (351 aa)    
Predicted Functional Partners:
sync_1438
Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.
 
 0.991
sync_1228
Uncharacterized membrane protein.
    
 0.905
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.899
sync_1439
ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
 
    0.892
sync_1473
Predicted calcineurin family phosphoesterase.
   
 0.865
sync_1732
Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.
 
     0.813
sync_1460
Chalcone synthase; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797.
    
 0.706
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.668
sync_0014
RNA-binding region RNP-1 (RNA recognition motif); Identified by match to protein family HMM PF00076.
   
 0.635
sync_1048
Putative RNA-binding protein; Identified by match to protein family HMM PF00076.
   
 0.635
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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