sync_1438 protein (Synechococcus sp. CC9311)

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Score

sync_1438

Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679. (565 aa)

Predicted Functional Partners:

sync_1437

0.991

polA

0.954

sync_1439

0.892

sync_1732

0.813

holB

0.698

xth

0.690

sync_1174

0.548

sync_1435

0.526

rpoZ

0.467

sync_0446

0.453

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
holB	polA	sync_2592	sync_0928	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.935
holB	sync_0446	sync_2592	sync_0446	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	0.666
holB	sync_1174	sync_2592	sync_1174	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	RecF/RecN/SMC N terminal domain protein.	0.433
holB	sync_1435	sync_2592	sync_1435	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	Predicted phosphoesterase; Identified by match to protein family HMM PF00149.	0.540
holB	sync_1438	sync_2592	sync_1438	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	0.698
holB	xth	sync_2592	sync_2056	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.	0.440
polA	holB	sync_0928	sync_2592	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	0.935
polA	rpoZ	sync_0928	sync_2269	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.505
polA	sync_0446	sync_0928	sync_0446	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	0.942
polA	sync_1174	sync_0928	sync_1174	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	RecF/RecN/SMC N terminal domain protein.	0.916
polA	sync_1435	sync_0928	sync_1435	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Predicted phosphoesterase; Identified by match to protein family HMM PF00149.	0.955
polA	sync_1437	sync_0928	sync_1437	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Predicted exonuclease involved in mRNA processing.	0.668
polA	sync_1438	sync_0928	sync_1438	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	0.954
polA	xth	sync_0928	sync_2056	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.	0.871
rpoZ	polA	sync_2269	sync_0928	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.505
rpoZ	sync_0446	sync_2269	sync_0446	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	0.808
rpoZ	sync_1437	sync_2269	sync_1437	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Predicted exonuclease involved in mRNA processing.	0.540
rpoZ	sync_1438	sync_2269	sync_1438	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	0.467
sync_0446	holB	sync_0446	sync_2592	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.	0.666
sync_0446	polA	sync_0446	sync_0928	Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.942