STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1438Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679. (565 aa)    
Predicted Functional Partners:
sync_1437
Predicted exonuclease involved in mRNA processing.
 0.994
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.943
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
    
 0.927
sync_1439
ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
 
    0.885
sync_1732
Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.
 
   
 0.813
xth
Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.
  
 
 0.795
holB
DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678.
   
 0.786
sync_1174
RecF/RecN/SMC N terminal domain protein.
   
 0.726
sync_1435
Predicted phosphoesterase; Identified by match to protein family HMM PF00149.
  
 0.700
sync_0446
Conserved hypothetical protein; Identified by similarity to GB:CAE21900.1.
   
 
 0.673
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.