sync_1439 protein (Synechococcus sp. CC9311)

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sync_1439

ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271. (816 aa)

Predicted Functional Partners:

sync_1437

0.892

sync_1438

0.892

sync_1732

0.829

mutM

0.730

sync_1440

0.548

sync_1441

0.548

radA

0.526

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mutM	radA	sync_0561	sync_2596	formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.	0.601
mutM	sync_1439	sync_0561	sync_1439	formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	0.730
radA	mutM	sync_2596	sync_0561	DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.	formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	0.601
radA	sync_1439	sync_2596	sync_1439	DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	0.526
sync_1437	sync_1438	sync_1437	sync_1438	Predicted exonuclease involved in mRNA processing.	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	0.991
sync_1437	sync_1439	sync_1437	sync_1439	Predicted exonuclease involved in mRNA processing.	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	0.892
sync_1437	sync_1732	sync_1437	sync_1732	Predicted exonuclease involved in mRNA processing.	Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.	0.813
sync_1438	sync_1437	sync_1438	sync_1437	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	Predicted exonuclease involved in mRNA processing.	0.991
sync_1438	sync_1439	sync_1438	sync_1439	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	0.892
sync_1438	sync_1732	sync_1438	sync_1732	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.	0.813
sync_1439	mutM	sync_1439	sync_0561	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	0.730
sync_1439	radA	sync_1439	sync_2596	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.	0.526
sync_1439	sync_1437	sync_1439	sync_1437	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	Predicted exonuclease involved in mRNA processing.	0.892
sync_1439	sync_1438	sync_1439	sync_1438	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	Possible ATP-dependent DNA ligase; Identified by match to protein family HMM PF01068; match to protein family HMM PF04679.	0.892
sync_1439	sync_1440	sync_1439	sync_1440	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	Conserved hypothetical protein; Identified by similarity to GB:CAE21207.1.	0.548
sync_1439	sync_1441	sync_1439	sync_1441	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	Conserved hypothetical protein; Identified by similarity to GB:CAE19476.1.	0.548
sync_1439	sync_1732	sync_1439	sync_1732	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	Serine/threonine specific protein phosphatase; Identified by match to protein family HMM PF00149.	0.829
sync_1440	sync_1439	sync_1440	sync_1439	Conserved hypothetical protein; Identified by similarity to GB:CAE21207.1.	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	0.548
sync_1440	sync_1441	sync_1440	sync_1441	Conserved hypothetical protein; Identified by similarity to GB:CAE21207.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE19476.1.	0.773
sync_1441	sync_1439	sync_1441	sync_1439	Conserved hypothetical protein; Identified by similarity to GB:CAE19476.1.	ATP-dependent helicase, DEAD/DEAH box family protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.	0.548