STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1463D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00107; match to protein family HMM TIGR02818. (403 aa)    
Predicted Functional Partners:
sync_1462
Putative esterase/lipase/thioesterase; Serine hydrolase involved in the detoxification of formaldehyde.
 0.999
sync_0822
Alcohol dehydrogenase; Identified by match to protein family HMM PF00248.
   
 0.928
sync_0566
NAD-dependent aldehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.927
sync_2080
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
 0.923
sync_2669
Iron-containing alcohol dehydrogenase; Identified by match to protein family HMM PF00465.
   
 
 0.868
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.671
tadA
Cytidine/deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.471
sync_1464
Conserved hypothetical protein; Identified by similarity to GB:CAE21818.1.
       0.462
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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