STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1465Glycosyl transferase, group 2 family protein domain protein; Identified by match to protein family HMM PF00535. (667 aa)    
Predicted Functional Partners:
sync_0592
Putative glycosyltransferase; Identified by match to protein family HMM PF00535.
  
  
 
0.927
sync_2936
Sucrose phosphate synthase; Identified by match to protein family HMM PF00534; match to protein family HMM TIGR02471; match to protein family HMM TIGR02472.
    
 0.915
wcaG-3
WbnF; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
   
 
 0.805
glgC
Glucose-1-phosphate adenylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
 
 0.804
sync_1466
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.778
sync_1446
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.638
sync_2671
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.599
sync_0812
Conserved hypothetical protein.
  
 
 0.592
sync_2447
O-linked GlcNAc transferase, putative; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.592
sync_1467
Endoglucanase.
     
 0.537
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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