sync_1466 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_1466

Hypothetical protein; Identified by Glimmer2; putative. (393 aa)

Predicted Functional Partners:

sync_1465

0.778

sync_1041

0.521

sync_2541

0.521

sync_1467

0.509

sync_0573

0.458

hlyB

0.449

sync_1464

0.444

macB

0.409

devC

0.409

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
devC	sync_1041	sync_1658	sync_1041	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.467
devC	sync_1466	sync_1658	sync_1466	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Hypothetical protein; Identified by Glimmer2; putative.	0.409
devC	sync_2541	sync_1658	sync_2541	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.467
hlyB	sync_0573	sync_2861	sync_0573	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.772
hlyB	sync_1041	sync_2861	sync_1041	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.492
hlyB	sync_1466	sync_2861	sync_1466	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Hypothetical protein; Identified by Glimmer2; putative.	0.449
hlyB	sync_2541	sync_2861	sync_2541	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.503
macB	sync_1041	sync_1416	sync_1041	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.467
macB	sync_1466	sync_1416	sync_1466	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Hypothetical protein; Identified by Glimmer2; putative.	0.409
macB	sync_2541	sync_1416	sync_2541	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.467
sync_0573	hlyB	sync_0573	sync_2861	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	0.772
sync_0573	sync_1041	sync_0573	sync_1041	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.403
sync_0573	sync_1465	sync_0573	sync_1465	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Glycosyl transferase, group 2 family protein domain protein; Identified by match to protein family HMM PF00535.	0.415
sync_0573	sync_1466	sync_0573	sync_1466	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Hypothetical protein; Identified by Glimmer2; putative.	0.458
sync_0573	sync_2541	sync_0573	sync_2541	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.403
sync_1041	devC	sync_1041	sync_1658	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	ABC-transporter, membrane spanning component; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185.	0.467
sync_1041	hlyB	sync_1041	sync_2861	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	0.492
sync_1041	macB	sync_1041	sync_1416	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	Macrolide ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.467
sync_1041	sync_0573	sync_1041	sync_0573	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.403
sync_1041	sync_1466	sync_1041	sync_1466	Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	Hypothetical protein; Identified by Glimmer2; putative.	0.521