Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_1472Possible transcriptional regulator protein; Identified by match to protein family HMM PF00037. (732 aa)    
Predicted Functional Partners:
sync_0063
Conserved hypothetical protein.
   
 
 0.737
sync_2106
Identified by match to protein family HMM PF04012.
   
 
 0.737
sync_2602
Uncharacterized conserved protein; Identified by match to protein family HMM PF02698.
  
     0.595
fcs
feruloyl-CoA synthetase; Identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; match to protein family HMM TIGR01923.
       0.572
sync_2634
Conserved hypothetical protein.
  
     0.566
sync_2779
Flavoprotein; Identified by match to protein family HMM PF00753; match to protein family HMM PF01613.
  
     0.561
sync_2552
Conserved hypothetical protein; Identified by similarity to GB:CAE08712.1.
  
     0.554
sync_1803
Carotenoid binding protein; Identified by match to protein family HMM PF02136; Belongs to the orange carotenoid-binding protein family.
  
     0.542
sync_1142
Conserved hypothetical protein.
  
     0.512
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.503
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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