Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_1497Manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein; Identified by match to protein family HMM PF00950. (278 aa)    
Predicted Functional Partners:
sync_1498
Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
sync_1499
ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.994
sync_1749
ABC transporter, ATP binding domain, possibly Mn transport; Identified by match to protein family HMM PF00005.
 
 
 0.896
sync_1757
Iron chelate ABC transporter (FeCT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.892
sync_1758
Cation ABC transporter, cation-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
  
 0.833
ssaB
ABC transporter, substrate binding protein, possibly Mn; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.830
sync_1500
Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.
       0.628
sync_1495
Identified by match to protein family HMM PF02683.
       0.444
sync_1493
Conserved hypothetical protein.
       0.436
sync_1494
RNA polymerase sigma-70 factor family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
       0.436
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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