STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1503Thiol oxidoreductase; Identified by match to protein family HMM PF06537. (445 aa)    
Predicted Functional Partners:
sync_1502
Iron-regulated protein A precursor, putative.
 
  
 0.956
sync_1545
ABC-type Fe3+ transport system periplasmic component; Identified by match to protein family HMM PF01547.
 
    0.499
sync_2048
ABC-type Fe3+ transport system permease component; Identified by match to protein family HMM PF00528.
  
    0.424
sync_1504
Conserved hypothetical protein.
       0.423
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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