sync_1523 protein (Synechococcus sp. CC9311)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Coexpression

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[Homology]

Score

sync_1523

Uncharacterized protein. (401 aa)

Predicted Functional Partners:

sync_0156

0.957

sync_0215

0.764

sync_1581

0.753

sync_0892

0.745

sync_1667

0.731

sync_0345

0.726

sync_0313

0.713

sync_1825

0.711

sync_2610

0.703

sync_1629

0.698

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0156	sync_0892	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Ferredoxin; Identified by match to protein family HMM PF00111.	0.438
sync_0156	sync_1523	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Uncharacterized protein.	0.957
sync_0156	sync_1667	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Arylesterase.	0.457
sync_0215	sync_0313	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Uncharacterized protein.	0.755
sync_0215	sync_0345	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Uncharacterized secreted or membrane protein.	0.736
sync_0215	sync_0892	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Ferredoxin; Identified by match to protein family HMM PF00111.	0.771
sync_0215	sync_1523	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Uncharacterized protein.	0.764
sync_0215	sync_1581	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Identified by match to protein family HMM PF05419.	0.467
sync_0215	sync_1667	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Arylesterase.	0.696
sync_0215	sync_2610	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	Uncharacterized protein.	0.442
sync_0313	sync_0215	Uncharacterized protein.	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	0.755
sync_0313	sync_0345	Uncharacterized protein.	Uncharacterized secreted or membrane protein.	0.755
sync_0313	sync_0892	Uncharacterized protein.	Ferredoxin; Identified by match to protein family HMM PF00111.	0.770
sync_0313	sync_1523	Uncharacterized protein.	Uncharacterized protein.	0.713
sync_0313	sync_1667	Uncharacterized protein.	Arylesterase.	0.623
sync_0345	sync_0215	Uncharacterized secreted or membrane protein.	Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.	0.736
sync_0345	sync_0313	Uncharacterized secreted or membrane protein.	Uncharacterized protein.	0.755
sync_0345	sync_0892	Uncharacterized secreted or membrane protein.	Ferredoxin; Identified by match to protein family HMM PF00111.	0.660
sync_0345	sync_1523	Uncharacterized secreted or membrane protein.	Uncharacterized protein.	0.726
sync_0345	sync_1667	Uncharacterized secreted or membrane protein.	Arylesterase.	0.749