Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_1524Uncharacterized protein. (120 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
 
     0.841
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
     0.762
sync_2587
Conserved hypothetical protein; Identified by similarity to GB:CAE22160.1; Belongs to the UPF0367 family.
  
     0.760
sync_1312
Fe-S cluster protein; Identified by match to protein family HMM PF03692.
  
     0.758
sync_2197
Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.
  
     0.757
sync_2096
Conserved hypothetical protein.
  
     0.746
sync_0890
Conserved hypothetical protein.
  
     0.735
psb27
Possible photosystem II Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.735
sync_0313
Uncharacterized protein.
  
     0.734
thf1
Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.
  
    0.733
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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