STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_1524Uncharacterized protein. (120 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
 
     0.832
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
     0.762
sync_2587
Conserved hypothetical protein; Identified by similarity to GB:CAE22160.1; Belongs to the UPF0367 family.
  
     0.760
sync_1312
Fe-S cluster protein; Identified by match to protein family HMM PF03692.
  
     0.758
sync_2197
Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.
  
     0.757
sync_2096
Conserved hypothetical protein.
  
     0.746
sync_0890
Conserved hypothetical protein.
  
     0.735
psb27
Possible photosystem II Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.735
sync_0313
Uncharacterized protein.
  
     0.734
thf1
Uncharacterized protein; May be involved in photosynthetic membrane biogenesis.
  
     0.732
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.